| 1992 | Youniverse | Rob Brown, Whit Dickey, Joe Morris | | 1 |
| 1997 | Strings | Ivo Perelman Duo Featuring Joe Morris | | 1 |
| 1998 | Like Rays | Joe Morris, Ken Vandermark, Hans Poppel | | 1 |
| 1999 | Deep Telling | Joe Morris / DKV Trio | | 3 |
| 2000 | [Soul Search] | Joe Morris + Mat Maneri | | 1 |
| 2000 | Groove Therapy | Ray Riendeau & Joe Morris | | 1 |
| 2001 | Singularity | Joe Morris | | 1 |
| 2001 | Out Right Now | Maneri, Morris, Maneri | | 1 |
| 2001 | Voices Lowered | Lantner / Maneri / Morris | | 1 |
| 2002 | Age Of Everything | Joe Morris | | 1 |
| 2002 | Eloping With the Sun | William Parker, Joe Morris, Hamid Drake | | 1 |
| 2005 | Natural History | Joe Morris, Joe Sexton, Croix Galipault | | 1 |
| 2007 | Healing Force - The Songs of Albert Ayler | Vinny Golia, Aurora Josephson, Henry Kaiser, Mike Keneally, Joe Morris, Damon Smith, Weasel Walter | | 1 |
| 2007 | Rebus | Joe Morris/Ken Vandermark/Luther Gray | | 1 |
| 2008 | Elm City Duets | Joe Morris, Barre Phillips | | 1 |
| 2008 | Fine Objects | Petr Cancura, Joe Morris, Jason Nazary | | 1 |
| 2008 | Four Improvisations (Duo) 2007 | Anthony Braxton, Joe Morris | | 1 |
| 2008 | MVP LSD | Joe Morris, John Voigt, Tom Plsek | | 1 |
| 2009 | Colorfield | Joe Morris | | 1 |
| 2009 | Wildlife | Joe Morris | | 1 |
| 2014 | Red Hill | Wadada Leo Smith / Jamie Saft / Joe Morris / Balázs Pándi | | 1 |
| 2014 | Nine Ways to Read a Bridge | Ken Vandermark Duos W/ Agustí Fernández - Christof Kurzmann - Joe McPhee - Joe Morris Trios W/ Paul Lytton - Nate Wooley - Eddie Prévost - John Tilbury | | 1 |
| 2015 | Ticonderoga | Joe McPhee, Jamie Saft, Joe Morris & Charles Downs | | 2 |
| 2016 | Breaking Point | Ivo Perelman, Mat Maneri, Joe Morris, Gerald Cleaver | | 1 |
| 2016 | The Art Of The Improv Trio Volume 5 | Ivo Perelman, Joe Morris, Gerald Cleaver | | 1 |
| 2016 | The Art Of The Improv Trio Volume 6 | Ivo Perelman, Joe Morris, Gerald Cleaver | | 1 |
| 2016 | Ambrosia | Joe Morris, Agustí Fernández | | 1 |
| 2018 | Wet Robots | Fay Victor's SoundNoiseFunk With Joe Morris, Sam Newsome, Reggie Nicholson | | 1 |
| 2018 | Traversing Orbits | Mary Halvorson – Joe Morris | | 1 |
| 2019 | Cowboy Transfiguration | Brad Barrett, Joe Morris, Tyshawn Sorey | | 1 |
| 2020 | Field of Materials | Joe Morris, Mike Pride & Chris Pitsiokos | | 1 |
| 2020 | Evolution of Something | Joe Morris / Hery Paz / Juan Pablo Carletti | | 1 |
| 2020 | Shamanism | Ivo Perelman • Matthew Shipp • Joe Morris | | 3 |
| 2021 | ERA | Joe McPhee & Joe Morris | | 1 |
| 2022 | Elliptic Time | Ivo Perelman & Joe Morris | | 1 |
| 2023 | Seven Skies Orchestra | Ivo Perelman, Nate Wooley, Mat Maneri, Fred Lonberg-Holm, Joe Morris & Matt Moran | | 1 |
| 2024 | Messa di voce | Ivo Perelman • Fay Victor • Joe Morris • Ramon Lopez | | 1 |
| — | Camera | Joe Morris | | 1 |
| — | Family Ties | Ivo Perelman / Joe Morris / Gerald Cleaver | | 1 |
| — | Sweatshop | Joe Morris | | 1 |
| — | The Story of Mankind | Jim Hobbs, Joe Morris & Luther Gray | | 1 |
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